PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ZF-HD
Protein Properties Length: 280aa    MW: 30848.7 Da    PI: 9.3529
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-28850PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.61.7e-3445101358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAas+Ggha+DGCgEfmps++ + +++++lkCaACgCHRnFHRre+ 
    Lsa004226  45 VVVYKECLKNHAASIGGHALDGCGEFMPSPTCTpTDPKSLKCAACGCHRNFHRREPI 101
                  689****************************999********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.3E-2946100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2346103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.5E-324899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0144899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.29E-16161234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-26162234IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-24173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDLKHPTTTI PEPESDTPPR SQSIKKLLSF QNGKPHHHHP PPSTVVVYKE CLKNHAASIG  60
GHALDGCGEF MPSPTCTPTD PKSLKCAACG CHRNFHRREP INDFPATVTR NHFIDFNRPY  120
QTSTSTSTSP TPPSPPPQPT NYAFGGHLLL SLSTAADQTH TTATPMAIKT SGRKRFRTKF  180
SLDQKEKMTI FAEKLGWKMQ RCDDKLIADF CNEIGIRRGI FKVWMHNNKN NFGKREKDIT  240
TTAITGVAAA VVRSNDSTHQ DNGSDDVHLQ ASTNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211742311875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257380.12e-78PREDICTED: zinc-finger homeodomain protein 9
TrEMBLA0A124SD851e-133A0A124SD85_CYNCS; Homeodomain-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.18e-59homeobox protein 30